This review outlines the input data requirements, supported operating systems and particular attributes of thirty- two amplicon processing pipelines with the goal of helping users to select a pipeline for their metabarcoding projects.
Hakimzadeh, A., Abdala Asbun, A., Albanese, D., Bernard, M., Buchner, D., Callahan, B., Caporaso, J. G., Curd, E., Djemiel, C., Brandström Durling, M., Elbrecht, V., Gold, Z., Gweon, H. S., Hajibabaei, M., Hildebrand, F., Mikryukov, V., Normandeau, E., Özkurt, E., M Palmer, J., … Anslan, S. (2023). A pile of pipelines: An overview of the bioinformatics software for metabarcoding data analyses. Zenodo. https://doi.org/10.5281/zenodo.18219794.
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