• Analysis & curation

    MitoGeneExtractor

    MitoGeneExtractor can be used to conveniently extract mitochondrial protein-coding genes from next-generation sequencing libraries. Developed within the Biodiversity Genomics Europe project.

  • Analysis & curation

    ena-submission

    A collection of scripts to generate sample registration forms and a bulk-ena-webincli spreadsheet for high-throughput, semi-automated submission of trimmed reads to ENA. Developed within the Biodiversity Genomics Europe project.

  • Analysis & curation

    fasta_compare

    A Python script for analysing DNA barcode sequences from multiple FASTA files, evaluating sequence quality based on multiple metrics, and selecting the best sequences according to configurable BOLD BIN quality criteria. Developed within the Biodiversity Genomics Europe project.

  • Analysis & curation

    DNA Barcode Validator

    A Python-based toolkit for validating DNA barcode sequences through structural and taxonomic validation developed within the Biodiversity Genomics Europe project. This tool helps ensure sequence quality and taxonomic accuracy for submissions to the Barcode of Life Data System (BOLD) and to Naturalis's DNA domain within the BioCloud.

  • Analysis & curation

    gene_fetch

    gene_fetch is a Python tool for high-throughput retrieval of protein and/or gene sequences from NCBI GenBank for single or multiple taxa developed within the Biodiversity Genomics project.

  • All resources,Analysis & curation

    BeeGees

    A snakemake workflow for recovering barcode sequences from genome skim data generated from museum (hDNA) specimens.

  • Analysis & curation

    BGE BOLD Library Curation Pipeline

    The pipeline helps automate the analysis of data on BOLD by processing and curating barcode reference sequence data. The pipeline has been developed within the Biodiversity Genomics Europe project.

  • Analysis & curation

    BGE Library Curation Tool

    A decentralised browser interface designed to support taxonomic experts in building a curated DNA barcode reference library for European animal species. Developed within the Biodiversity Genomics Europe project (BGE).

  • Analysis & curation

    Open data, software and code guidelines from Opean Research Europe

    Guidelines relating to the Open Research Europe policy on data availability that is aligned to the Horizon Europe requirements for research data management.

  • Analysis & curation

    Publishing DNA-derived data through biodiversity data platforms guidance

    A Global Biodiveristy Information Facility (GBIF) guide on better exposure of DNA-derived data through general biodiversity data platforms (including national biodiversity portals)

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